Moving atoms of a protein

Hi Elaine, I have this alphafold structure (see picture) that is basically a huge string/thread and then a folded domain. I wanted to stretch the string to make its length more obvious. Is it possible to pull the residues without messing with the connections (peptide bond)? I am using chimeraX and I saw that you can "move atoms" but when you pull one you don't pull the others. If chimera cannot do this, do you know if another program will allow me to do it? Thank you in advance for your help, Best regards, Abril Gijsbers [image: image.png]

Dear Abril, you can stretch the chain using the *ISOLDE* software, which is available as a tool within ChimeraX. More info at the website: https://tristanic.github.io/isolde/index.html Enjoy! Jan ____________________________________ *Mgr. Ján Bíňovský* | *CEITEC MU* PhD student | Pavel Plevka Research Group *tel:* +420 549 49 *7833 *; +420 735 960 844 *e-mail*: jan.binovsky@ceitec.muni.cz *web*: www.ceitec.cz <http://www.ceitec.eu/> | PlevkaLab <http://plevkalab.ceitec.cz/> Masaryk University CEITEC – Central European Institute of Technology Kamenice 5, 625 00 Brno, Czech Republic Office no. E35/2S049 *#CEITECScience * facebook <https://www.facebook.com/CEITEC> | twitter <https://twitter.com/ceitec_brno> | *instagram <https://www.instagram.com/ceitec_brno/>* | *linkedIn <https://www.linkedin.com/company/ceitec---central-european-institute-of-technology/>* On Fri, 18 Aug 2023 at 04:41, Abril Gijsbers via Chimera-users < chimera-users@cgl.ucsf.edu> wrote:
Hi Elaine,
I have this alphafold structure (see picture) that is basically a huge string/thread and then a folded domain. I wanted to stretch the string to make its length more obvious. Is it possible to pull the residues without messing with the connections (peptide bond)? I am using chimeraX and I saw that you can "move atoms" but when you pull one you don't pull the others. If chimera cannot do this, do you know if another program will allow me to do it?
Thank you in advance for your help, Best regards, Abril Gijsbers
[image: image.png] _______________________________________________ Chimera-users mailing list -- chimera-users@cgl.ucsf.edu To unsubscribe send an email to chimera-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimera-users@cgl.ucsf.edu/
participants (2)
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Abril Gijsbers
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Jan Binovsky