Move model with associated map?
Hi all, Is there any way to apply the same transformation used by matchmaker for alignment to a map? I have two structures (map+atomic model) in different frames of reference. I would like to align one structure on the other, but also move the associated map in the same way. Is this possible? Cheers Oli
I answered my own question - matrixcopy does the trick! For anyone facing the same issue: Let's say I have two structures (#1 with associated density map #2 and #3 with associated density map #4): 1. mmaker #1 #3 to align #3 on #1. 2. matrixcopy #3 #4 to apply the transformation matrix determined by mmaker onto the second density map. Cheers Oli
On May 10, 2022, at 11:02 AM, Oliver Clarke <olibclarke@gmail.com> wrote:
Hi all,
Is there any way to apply the same transformation used by matchmaker for alignment to a map?
I have two structures (map+atomic model) in different frames of reference. I would like to align one structure on the other, but also move the associated map in the same way. Is this possible?
Cheers Oli
Hi Oli, Take a look at "matrixcopy" ... it may work for this purpose if the map wasn't moved separately from the atomic model prior to the matchmaker alignment. <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/matrixcopy.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On May 10, 2022, at 8:02 AM, Oliver Clarke via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:
Hi all,
Is there any way to apply the same transformation used by matchmaker for alignment to a map?
I have two structures (map+atomic model) in different frames of reference. I would like to align one structure on the other, but also move the associated map in the same way. Is this possible?
Cheers Oli _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimera-users
participants (2)
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Elaine Meng -
Oliver Clarke