Actually, you can now bring up a Ramachandran plot via the user interface in the Chimera daily build (http://www.cgl.ucsf.edu/chimera/download.html#daily). If you pop up the Model Panel (Favorites -> Model Panel), there should be a "Ramachandran plot..." button that displays a plot for each selected model. This is still an early implementation, so please send us bug reports and suggestions. Conrad On 8/9/2010 5:53 PM, Daniel Gurnon wrote:

Conrad, This script isn't working for me- I get the following error:

Traceback (most recent call last): File "C:\ProgramData\Chimera\ram3.py.txt", line 2, in <module> from Plotdialog import PlotDialog ImportError: No module named Plotdialog

Can you tell me how to make it work? Thanks Dan

On Mon, Jun 7, 2010 at 1:55 PM, Conrad Huang <conrad@cgl.ucsf.edu <mailto:conrad@cgl.ucsf.edu>> wrote:

It's been on our list for a while now. In the mean time, try out this script. It generates a Ramachandran chart for the first open molecule.

Conrad

On 6/3/10 8:55 AM, James Nettles wrote:

Does Chimera do Ramachandran Plots and I'm missing something obvious?

I like doing just about everything else in Chimera :-)

Thanks,

Jim _______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu <mailto:Chimera-users@cgl.ucsf.edu> http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users

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