Hi Bala, I've attached 5 scripts I've written over the last few months. Their functions are: 1) show anisotropic ellipsoids on selected atoms 2) print cis peptides to reply log 3) measure atom distance or atom-atom angle to a plane 4) drive the chi angles of a selected residue in 10 degree increments and write the clashes to files 5) measure the minimum distance of single-character chain residues (i.e. no het, water) to a selection (typically a ligand) Which ones are which should be obvious from the file names I think. --Eric On Feb 11, 2009, at 8:25 AM, Bala subramanian wrote:

Dear Chimerians,

Can someone help me by providing examples of python scripts written for analyzing structures inside chimera. I have seen the chimera programmers guide but i need some more scripts written for different tasks to understand the way of accessing certain residues or atoms in a structure and extracting its attributes etc.

Cheers, Bala