save gaussian volume filter as a new map?
Hi All, How do I save a map that I applied a gaussian volume filter to? I opened a cryo EMD map and then applied a gaussian volume filter to it with a width of 1.5 to clean up some of the extra detail. I would now like to save that map out of Chimera to use elsewhere. When I save the Chimera file it says “EMD-6413.map gaussian was not saved with the session.To have them included in the session it must be saved in separate volume files before the session is saved.” How do I do that? <http://www.artforscience.com/> <http://www.artforscience.com/>H. Adam Steinberg Artist & Scientist 7904 Bowman Rd Lodi, WI 53555 608/729-5944 <http://www.artforscience.com/>artforscience <http://www.artforscience.com/> Facebook <http://facebook.com/artforscience1> Twitter <http://twitter.com/artforscience> McPherson Eye Research Institute <http://www.vision.wisc.edu/>
Hi Adam, You can use "File… Save map as" from the Volume Viewer dialog’s menu, or the “save” option of the “volume” command: <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/volumeviewer/volumeviewer.html#organization> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/volume.html#output> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/savemodel.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Apr 5, 2016, at 6:01 PM, H. Adam Steinberg <adam@artforscience.com> wrote:
Hi All, How do I save a map that I applied a gaussian volume filter to?
I opened a cryo EMD map and then applied a gaussian volume filter to it with a width of 1.5 to clean up some of the extra detail. I would now like to save that map out of Chimera to use elsewhere.
When I save the Chimera file it says “EMD-6413.map gaussian was not saved with the session.To have them included in the session it must be saved in separate volume files before the session is saved.” How do I do that?
Thank you Elaine, that works!
On Apr 6, 2016, at 11:32 AM, Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hi Adam, You can use "File… Save map as" from the Volume Viewer dialog’s menu, or the “save” option of the “volume” command:
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/volumeviewer/volumeviewer.html#organization> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/volume.html#output> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/savemodel.html>
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Apr 5, 2016, at 6:01 PM, H. Adam Steinberg <adam@artforscience.com> wrote:
Hi All, How do I save a map that I applied a gaussian volume filter to?
I opened a cryo EMD map and then applied a gaussian volume filter to it with a width of 1.5 to clean up some of the extra detail. I would now like to save that map out of Chimera to use elsewhere.
When I save the Chimera file it says “EMD-6413.map gaussian was not saved with the session.To have them included in the session it must be saved in separate volume files before the session is saved.” How do I do that?
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Elaine Meng -
H. Adam Steinberg