Reg: Peptide Dimer
Hi,
I would like to know if is it possible to prepare peptide dimer In Chimera. If yes, how and if no what are the possible ways to prepare it? Thanks in advance.
With kind regards, Amit Jaiswal
Hi Amit, If you mean you want to create a dipeptide, then you can do it with Build Structure (in menu under Tools… Structure Editing). In that tool, see the "Start Structure" section, the peptide option.
See description here: http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/editing/editing.html#start
After you create it, you can do other things like add hydrogens (see Adjust Torsions, AddH, Dock Prep, etc. … these tools are also in the menu under Tools… Structure Editing). Click the Help button on each tool to see more information.
I hope this helps, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Sep 30, 2014, at 4:16 AM, Amit Jaiswal amitjai20@gmail.com wrote:
Hi,
I would like to know if is it possible to prepare peptide dimer In Chimera. If yes, how and if no what are the possible ways to prepare it? Thanks in advance.
With kind regards, Amit Jaiswal
participants (2)
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Amit Jaiswal
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Elaine Meng