Friends,
1) I downloaded the chimera's today's build and tried to change the nucleic acid representation using..Depiction in Tools. I get the following error. Kindly write me what is going wrong ?
TclError: unknown option -width TclError: unknown option -width
File "CHIMERA/share/CGLtk/OptionMenu.py", line 15, in __init__
See reply log for Python traceback.
Thanks, Bala
Hi Bala, Please use the Report Bug button on the error dialog instead of sending e-mail to this list. That would send us more information about what you are doing and what kind of computer you are on, and possibly allow us to reproduce the problem.
I don't know what the problem is, but I also had a problem (a different one) with Nucleotides in the new daily build. I didn't have a problem with Nucleotides in the snapshot, so you may want to try the snapshot version instead: http://www.cgl.ucsf.edu/chimera/download.html#snapshots
Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Aug 31, 2009, at 1:56 AM, Bala subramanian wrote:
Friends,
- I downloaded the chimera's today's build and tried to change the
nucleic acid representation using..Depiction in Tools. I get the following error. Kindly write me what is going wrong ?
TclError: unknown option -width TclError: unknown option -width
File "CHIMERA/share/CGLtk/OptionMenu.py", line 15, in __init__
See reply log for Python traceback.
Thanks, Bala
Hi everybody,
is there a command equivalent to the menu command: coulombic surface coloring. I need to include it in a movie script.
Thanks
James
Elaine Meng wrote:
Hi Bala, Please use the Report Bug button on the error dialog instead of sending e-mail to this list. That would send us more information about what you are doing and what kind of computer you are on, and possibly allow us to reproduce the problem.
I don't know what the problem is, but I also had a problem (a different one) with Nucleotides in the new daily build. I didn't have a problem with Nucleotides in the snapshot, so you may want to try the snapshot version instead: http://www.cgl.ucsf.edu/chimera/download.html#snapshots
Best, Elaine
Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Aug 31, 2009, at 1:56 AM, Bala subramanian wrote:
Friends,
- I downloaded the chimera's today's build and tried to change the
nucleic acid representation using..Depiction in Tools. I get the following error. Kindly write me what is going wrong ?
TclError: unknown option -width TclError: unknown option -width
File "CHIMERA/share/CGLtk/OptionMenu.py", line 15, in __init__
See reply log for Python traceback.
Thanks, Bala
Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users
On Aug 31, 2009, at 5:34 PM, James Fethiere wrote:
is there a command equivalent to the menu command: coulombic surface coloring. I need to include it in a movie script.
Hi James, The short answer is no, there is not. Probably should be. I'll try to fix that when I can. Not a great short answer, so here's a longer answer. I've attached a script that if you open it ("open esp.py") will coulombic-ly color all open molecular surfaces. By default it will color red-white-blue -10 - 0 - 10, but I think it's fairly easy to modify those values just by looking at the script. Let me know if you have problems.
--Eric
Eric Pettersen UCSF Computer Graphics Lab http://www.cgl.ucsf.edu
participants (4)
-
Bala subramanian -
Elaine Meng -
Eric Pettersen -
James Fethiere