Thank you. Miriam Gochin Touro University - CA miriam.gochin@tu.edu 707-638-5463 ________________________________________ From: Elaine Meng [meng@cgl.ucsf.edu] Sent: Monday, April 12, 2010 2:09 PM To: Miriam Gochin Cc: chimera-users@cgl.ucsf.edu Subject: Re: [Chimera-users] question about ViewDock Hi Miriam, You can use the command "matrixcopy" to apply the rotation/translation of the second receptor model to the corresponding ligands. For example, if the second receptor is model 3 and the ligands that go with it are in model 4, try: matrixcopy 3 4 <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/matrixcopy.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Apr 11, 2010, at 9:23 PM, Miriam Gochin wrote:

I have a question about ViewDock. It works fine for one receptor and several ligands, but if I open a second receptor model and rotate it, then ligands I open with ViewDock for the second receptor are in the original (unrotated) position. Is there a way to correct the ligand positions for the current rotation?

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