Dear Dr. Elaine, Thank you very much for prompt reply and consideration of my request. I received the all tutorial / manual which you have through link. Yours sincerely, Vivek Keshri On Tue, Jan 31, 2012 at 12:16 AM, Elaine Meng <meng@cgl.ucsf.edu> wrote:

Dear Vivek, In general, you could use the FindHBond and Find Clashes/Contacts tools (or their command equivalents).

< http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/findhbond/findhbond...

...

< http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/findclash/findclash...

...

For example, see this tutorial: <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/squalene.html>

There are several additional tutorials that may be useful for learning how to use Chimera: <http://www.cgl.ucsf.edu/Outreach/Tutorials/GettingStarted.html> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/frametut.html>

Best, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco

On Jan 30, 2012, at 2:01 AM, Vivek Keshri wrote:

...

Dear Sir / Madam,

I Vivek Keshri writing from Uttar Pradesh India, I am opening docked PDB file in Chimera 1.5.3 and want to identify all residue of receptor and ligand which are involved in binding.

Waiting for favorable response...

Yours Sincerely,

Vivek Keshri