Regarding Bonding Pattern and all residue
Dear Sir / Madam, I Vivek Keshri writing from Uttar Pradesh India, I am opening docked PDB file in Chimera 1.5.3 and want to identify all residue of receptor and ligand which are involved in binding. Waiting for favorable response... Yours Sincerely, Vivek Keshri +91-8005261512
Dear Vivek, In general, you could use the FindHBond and Find Clashes/Contacts tools (or their command equivalents). <http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/findhbond/findhbond...> <http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/findclash/findclash...> For example, see this tutorial: <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/squalene.html> There are several additional tutorials that may be useful for learning how to use Chimera: <http://www.cgl.ucsf.edu/Outreach/Tutorials/GettingStarted.html> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/frametut.html> Best, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Jan 30, 2012, at 2:01 AM, Vivek Keshri wrote:
Dear Sir / Madam,
I Vivek Keshri writing from Uttar Pradesh India, I am opening docked PDB file in Chimera 1.5.3 and want to identify all residue of receptor and ligand which are involved in binding.
Waiting for favorable response...
Yours Sincerely,
Vivek Keshri
Dear Dr. Elaine, Thank you very much for prompt reply and consideration of my request. I received the all tutorial / manual which you have through link. Yours sincerely, Vivek Keshri On Tue, Jan 31, 2012 at 12:16 AM, Elaine Meng <meng@cgl.ucsf.edu> wrote:
Dear Vivek, In general, you could use the FindHBond and Find Clashes/Contacts tools (or their command equivalents).
< http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/findhbond/findhbond...
< http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/findclash/findclash...
For example, see this tutorial: <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/tutorials/squalene.html>
There are several additional tutorials that may be useful for learning how to use Chimera: <http://www.cgl.ucsf.edu/Outreach/Tutorials/GettingStarted.html> <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/frametut.html>
Best, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 30, 2012, at 2:01 AM, Vivek Keshri wrote:
Dear Sir / Madam,
I Vivek Keshri writing from Uttar Pradesh India, I am opening docked PDB file in Chimera 1.5.3 and want to identify all residue of receptor and ligand which are involved in binding.
Waiting for favorable response...
Yours Sincerely,
Vivek Keshri
participants (2)
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Elaine Meng -
Vivek Keshri