saving multiple models in Chimera
Dear Sirs/Madamme I have multiple PDB'a (ca.40) in the model panel. While trying to save each model in single file using option "Save multiple models in multiple files" I got this message: You must provide a file name that contains either $name or $number. I set the name to eg. A1_01 and/or A1_$01 but none of this works. How shall I manage that? Many thanks Kind regards Kamil J. Kuder, PhD Jagiellonian University Medical College Faculty of Pharmacy Department of Technology and Biotechnology of Drugs Medyczna 9 30-600 Krakow POLAND tel.: +48 12 602 55 86
Dear Kamil, It means exactly what it says, you have to enter something that literally includes “$name” or “$number”. For example, you could enter A1_$number.pdb Then Chimera substitutes in the actual numbers, to create multiple different names from the single name that you entered. I hope this helps, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Jul 25, 2016, at 4:21 AM, Kamil Kuder <kamil.kuder@uj.edu.pl> wrote:
Dear Sirs/Madamme
I have multiple PDB'a (ca.40) in the model panel. While trying to save each model in single file using option "Save multiple models in multiple files" I got this message: You must provide a file name that contains either $name or $number. I set the name to eg. A1_01 and/or A1_$01 but none of this works. How shall I manage that?
Many thanks Kind regards
Dear Elaine, Thank You for the help, it works fine. Looks like I didn't take the message literally :) Best, K Kamil J. Kuder, PhD Jagiellonian University Medical College Faculty of Pharmacy Department of Technology and Biotechnology of Drugs Medyczna 9 30-600 Krakow POLAND tel.: +48 12 602 55 86 ________________________________________ Od: Elaine Meng <meng@cgl.ucsf.edu> Wysłane: 25 lipca 2016 18:58 Do: Kamil Kuder DW: chimera-users@cgl.ucsf.edu Temat: Re: [Chimera-users] saving multiple models in Chimera Dear Kamil, It means exactly what it says, you have to enter something that literally includes “$name” or “$number”. For example, you could enter A1_$number.pdb Then Chimera substitutes in the actual numbers, to create multiple different names from the single name that you entered. I hope this helps, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Jul 25, 2016, at 4:21 AM, Kamil Kuder <kamil.kuder@uj.edu.pl> wrote:
Dear Sirs/Madamme
I have multiple PDB'a (ca.40) in the model panel. While trying to save each model in single file using option "Save multiple models in multiple files" I got this message: You must provide a file name that contains either $name or $number. I set the name to eg. A1_01 and/or A1_$01 but none of this works. How shall I manage that?
Many thanks Kind regards
participants (2)
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Elaine Meng -
Kamil Kuder