Autodock Vina, APBS, PDB2PQR web services will be removed
Dear Chimera users, The Autodock Vina, APBS, and PDB2PQR tools in Chimera rely on web services provided by another lab, the National Biomedical Computation Resource. However, these web services are scheduled to be retired on April 30, 2020. When that happens, the Autodock Vina, APBS, and PDB2PQR tools in Chimera will no longer work, except for the (very few) people who use the tools to run locally installed copies of the program instead of the web services. Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
Thanks Elaine I am also curious about the future of the Modeller tool to refine loops via homology. will that also phase out? Dr. Gregory A Babbitt Associate Professor T.H. Gosnell School of Life Sciences Rochester Institute of Technology Rochester NY USA software website: http://people.rit.edu/gabsbi YouTube channel https://www.youtube.com/channel/UCJTBqGq01pBCMDQikn566Kw ________________________________________ From: Chimera-users <chimera-users-bounces@cgl.ucsf.edu> on behalf of Elaine Meng <meng@cgl.ucsf.edu> Sent: Thursday, April 23, 2020 6:20 PM To: chimera-users@cgl.ucsf.edu List Subject: [Chimera-users] Autodock Vina, APBS, PDB2PQR web services will be removed Dear Chimera users, The Autodock Vina, APBS, and PDB2PQR tools in Chimera rely on web services provided by another lab, the National Biomedical Computation Resource. However, these web services are scheduled to be retired on April 30, 2020. When that happens, the Autodock Vina, APBS, and PDB2PQR tools in Chimera will no longer work, except for the (very few) people who use the tools to run locally installed copies of the program instead of the web services. Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
Hi Gregory, The other web services used by Chimera (Modeller, Blast Protein, Clustal Omega, MUSCLE, and others) won't be affected at this time because they're provided by our lab (RBVI), not the NBCR. Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Apr 23, 2020, at 3:30 PM, Gregory Babbitt <gabsbi@rit.edu> wrote:
Thanks Elaine
I am also curious about the future of the Modeller tool to refine loops via homology.
will that also phase out?
Dr. Gregory A Babbitt Associate Professor T.H. Gosnell School of Life Sciences Rochester Institute of Technology Rochester NY USA software website: http://people.rit.edu/gabsbi YouTube channel https://www.youtube.com/channel/UCJTBqGq01pBCMDQikn566Kw
participants (2)
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Elaine Meng -
Gregory Babbitt