Hi Meng, Thanks! I used ChimeraX. I figured it out. It's due to reciprocal space that I was viewing. I changed the map to real space and then the indicator disappear. Best, Xiang > -----Original Messages----- > From: "Elaine Meng" <meng@cgl.ucsf.edu> > Sent Time: 2022-10-31 23:47:02 (Monday) > To: "Xiang Zhang" <zx18@mails.tsinghua.edu.cn> > Cc: Chimera <chimera-users@cgl.ucsf.edu>, "ChimeraX Users Help" <chimerax-users@cgl.ucsf.edu> > Subject: Re: [Chimera-users] xyz axis indicator > > Hi Xiang, > I am guessing you are using ISOLDE with ChimeraX (not Chimera) so I am cross-posting this question to the chimerax-users@cgl.ucsf.edu list. I am not expert with ISOLDE so I am not sure about the answer. > Best, > Elaine > ----- > Elaine C. Meng, Ph.D. > UCSF Chimera(X) team > Department of Pharmaceutical Chemistry > University of California, San Francisco > > > On Oct 30, 2022, at 10:58 PM, Xiang Zhang via Chimera-users <chimera-users@cgl.ucsf.edu> wrote: > > > > Hi all, > > > > I was wondering how I could hide the xyz indicator in the center of window when I was viewing the X-ray density from mtz file? It only appears in crystal unit view mode but disappears in EM projection side view. > > > > Best, > > Xiang > > <1667192316818.png>_______________________________________________ > > Chimera-users mailing list: Chimera-users@cgl.ucsf.edu > > Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimera-users </chimera-users@cgl.ucsf.edu></chimerax-users@cgl.ucsf.edu></chimera-users@cgl.ucsf.edu></zx18@mails.tsinghua.edu.cn></meng@cgl.ucsf.edu>

Thank you! Tristan, That works! I've looked for this command for a long time using guide and Google. Xiang -----Original Messages----- From:"Tristan Croll" <tcroll@altoslabs.com> Sent Time:2022-11-01 17:02:37 (Tuesday) To: "Xiang Zhang" <zx18@mails.tsinghua.edu.cn> Cc: "ChimeraX Users Help" <chimerax-users@cgl.ucsf.edu>, Chimera <chimera-users@cgl.ucsf.edu> Subject: Re: [chimerax-users] [Chimera-users] xyz axis indicator The command "cofr showPivot {true|false}" will show/hide the axis indicator. -- Tristan On Tue, Nov 1, 2022 at 4:53 AM Xiang Zhang via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote: Hi Meng, Thanks! I used ChimeraX. I figured it out. It's due to reciprocal space that I was viewing. I changed the map to real space and then the indicator disappear. Best, Xiang > -----Original Messages----- > From: "Elaine Meng" <meng@cgl.ucsf.edu> > Sent Time: 2022-10-31 23:47:02 (Monday) > To: "Xiang Zhang" <zx18@mails.tsinghua.edu.cn> > Cc: Chimera <chimera-users@cgl.ucsf.edu>, "ChimeraX Users Help" <chimerax-users@cgl.ucsf.edu> > Subject: Re: [Chimera-users] xyz axis indicator > > Hi Xiang, > I am guessing you are using ISOLDE with ChimeraX (not Chimera) so I am cross-posting this question to the chimerax-users@cgl.ucsf.edu list. I am not expert with ISOLDE so I am not sure about the answer. > Best, > Elaine > ----- > Elaine C. Meng, Ph.D. > UCSF Chimera(X) team > Department of Pharmaceutical Chemistry > University of California, San Francisco > > > On Oct 30, 2022, at 10:58 PM, Xiang Zhang via Chimera-users <chimera-users@cgl.ucsf.edu> wrote: > > > > Hi all, > > > > I was wondering how I could hide the xyz indicator in the center of window when I was viewing the X-ray density from mtz file? It only appears in crystal unit view mode but disappears in EM projection side view. > > > > Best, > > Xiang > > <1667192316818.png>_______________________________________________ > > Chimera-users mailing list: Chimera-users@cgl.ucsf.edu > > Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimera-users </chimera-users@cgl.ucsf.edu></chimerax-users@cgl.ucsf.edu></chimera-users@cgl.ucsf.edu></zx18@mails.tsinghua.edu.cn></meng@cgl.ucsf.edu> _______________________________________________ ChimeraX-users mailing list ChimeraX-users@cgl.ucsf.edu Manage subscription: https://www.rbvi.ucsf.edu/mailman/listinfo/chimerax-users