
Hi, I found an online post about how to use the sym command to duplicate models. The post is here: http://plato.cgl.ucsf.edu/pipermail/chimera-users/2011-June/006433.html The commands in the post are: open 1ei3 sym #0 group t,5,280 axis 1,0,.4 coord #0 surf true I got an error of "Invalid symmetry group syntax "t,5,280"" from the sym command. The versions that I have are daily build Oct 18 on Mac, and Oct 13 on Windows. Thanks, Joe

Hi Joe, The syntax was changed since that time -- if you use command "help sym" it will show the sym command documentation that goes with your downloaded version. Or, the development (current daily build) docs can be viewed here: <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/sym.html> It used to be that "t" was used for translation, but when tetrahedral symmetry was added in July, "t" was used for tetrahedral symmetry instead and "shift" was used for translation. Thus f you were intending to use translational symmetry, it should work to replace the "t" in what you tried with "shift". In general it is better to use the Help menu before searching for posts, as the information online might be for a different version of Chimera than you are using. I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Oct 19, 2011, at 12:48 PM, Joe Ping-Lin Hsiao wrote:
Hi, I found an online post about how to use the sym command to duplicate models. The post is here: http://plato.cgl.ucsf.edu/pipermail/chimera-users/2011-June/006433.html The commands in the post are:
open 1ei3 sym #0 group t,5,280 axis 1,0,.4 coord #0 surf true
I got an error of "Invalid symmetry group syntax "t,5,280"" from the sym command. The versions that I have are daily build Oct 18 on Mac, and Oct 13 on Windows. Thanks, Joe

Hi Joe, I changed the sym command translation symmetry in Chimera daily builds (1.6) so you use sym #0 group shift,5,280 while in Chimera 1.5.3 you would use sym #0 group t,5,280 The reason for the change is that the sym command now handles tetrahedral symmetry using "group t". This of course is annoying. So I've changed the Chimera daily build so it will produce the shifted copies using "group t,5,280" and will only produce tetrahedral symmetry if there are fewer than 2 arguments after the "t". The "group shift,5,280" syntax still works. So tonight's Chimera daily build will be backward compatible with the Chimera 1.5.3 production version. Tom
Hi,
I found an online post about how to use the sym command to duplicate models. The post is here: http://plato.cgl.ucsf.edu/pipermail/chimera-users/2011-June/006433.html The commands in the post are:
open 1ei3 sym #0 group t,5,280 axis 1,0,.4 coord #0 surf true
I got an error of "Invalid symmetry group syntax "t,5,280"" from the sym command. The versions that I have are daily build Oct 18 on Mac, and Oct 13 on Windows.
Thanks, Joe
participants (3)
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Elaine Meng
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Joe Ping-Lin Hsiao
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Tom Goddard