setting surface color of EM map in command-line
Dear specialists, I want to color spherical slices of different radius of my EM map in command line/script. How to set the "surface color" dialog in command-line? If anyone could give me a example? Thank you! Best regards! Jianhao
Hi Jianhao, The command equivalent to the surface color is scolor. There are examples using it in the documentation. https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/scolor.html Tom
On Aug 21, 2017, at 8:51 PM, "C.J." <biocjh@gmail.com> wrote:
Dear specialists,
I want to color spherical slices of different radius of my EM map in command line/script. How to set the "surface color" dialog in command-line? If anyone could give me a example? Thank you!
Best regards! Jianhao _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
Hi Jianhao, The “scolor” command does several types of surface coloring, including the radial coloring you describe. See the “scolor” manual page, “geometry radial” option. The second example near the top of the page uses this option. <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/scolor.html> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/scolor.html#radial> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Aug 21, 2017, at 8:51 PM, C.J. <biocjh@gmail.com> wrote:
Dear specialists,
I want to color spherical slices of different radius of my EM map in command line/script. How to set the "surface color" dialog in command-line? If anyone could give me a example? Thank you!
Best regards! Jianhao
Thank you! It really helps! Regards, Jianhao 2017-08-22 23:41 GMT+08:00 Elaine Meng <meng@cgl.ucsf.edu>:
Hi Jianhao, The “scolor” command does several types of surface coloring, including the radial coloring you describe. See the “scolor” manual page, “geometry radial” option. The second example near the top of the page uses this option.
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/scolor.html> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/scolor.html#radial
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Aug 21, 2017, at 8:51 PM, C.J. <biocjh@gmail.com> wrote:
Dear specialists,
I want to color spherical slices of different radius of my EM map in command line/script. How to set the "surface color" dialog in command-line? If anyone could give me a example? Thank you!
Best regards! Jianhao
-- Best regards! C.J.
participants (3)
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C.J. -
Elaine Meng -
Tom Goddard