distance between two residues in multiple pdb files
Dear Chimera users,
One of the ways to find distance between two residues (say, residue no 10 and residue no 15 of a pdb file) is the use of command 'distance' in the command line of Chimera. How can I use the command 'distance' for a multiple pdb files (say, 20 pdb files which are generated by simulation of a protein)? I mean, may I need some scripts for looping? Any other alternatives will also help me a lot.
Thank you, Mahendra Thapa University of Cincinnati,OH
Dear Mahendra, Please see this page on writing scripts with looping through structures:
http://www.rbvi.ucsf.edu/chimera/docs/ProgrammersGuide/basicPrimer.html
I hope this helps, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Jul 23, 2014, at 6:38 PM, Mahendra B Thapa thapamb@mail.uc.edu wrote:
Dear Chimera users, One of the ways to find distance between two residues (say, residue no 10 and residue no 15 of a pdb file) is the use of command 'distance' in the command line of Chimera. How can I use the command 'distance' for a multiple pdb files (say, 20 pdb files which are generated by simulation of a protein)? I mean, may I need some scripts for looping? Any other alternatives will also help me a lot. Thank you, Mahendra Thapa University of Cincinnati,OH
participants (2)
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Elaine Meng -
Mahendra B Thapa