Hi, If I open a trajectory and delete the starting residues before generating the Cytoscape RIN, the numbering does not start at 1 for me. Perhaps you need to use Chimera’s Help->Report A Bug menu item to start a bug report so that we can investigate your problem without involving everyone on the mailing list…. —Eric Eric Pettersen UCSF Computer Graphics Lab

On Jan 18, 2018, at 11:24 PM, Neha Gandhi <n.gandhiau@gmail.com> wrote:

Dear List,

I am loading gromacs trajectory in Chimera using .tpr and .xtc files. The residue number in gro file starts from 83 and not from 1. When I perform residue network analyis using chimera and cytoscape, the numbering of residues starts from 1. Is there a way to change the residue numbers either in .tpr file or in cytoscape? Changing the residue numbering after the trajectory is loaded doesn't help.

Thank you for your attention.

Regards, Neha

-- Regards, Dr. Neha S. Gandhi, Vice Chancellor's Research Fellow, Queensland University of Technology, 2 George Street, Brisbane, QLD 4000 Australia LinkedIn <> Research Gate <>

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