Selecting residues from one chain

Hi, I am a bit confused on how to select residues from a chain. This is the command I am trying:

Sorry for my previous email, it was sent too fast... I am trying to select residues from a chain, and I am trying this command: select :99,100,118-130,136,161,163,164.B What is wrong? I am getting: Expected an objects specifier or a keyword Thank you, JMCT

Hi JMCT, That sounds like an error message for ChimeraX, not Chimera. So first, you need to be sure about which program you are using!! (also there is a different mailing list for ChimeraX, chimerax-users@cgl.ucsf.edu if you are interested in that in the future) In Chimera, Your command would select residues 99,100,118-130,136,161,163 in ALL chains, and 164 in chain B. If you were using Chimera and wanted to select all those residues in chain B only, you would need command: select 99.B,100,B,118-130.B,136.B,161.B,163.B,164.B or you could select those residue numbers in all chains and then deselect the ones that are not chain B, e.g. select 99,100,118-130,136,161,163,164 ~sel ~:.B Help for atom specification in Chimera: <https://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/frameatom_spec.html> In ChimeraX, we have improved command-line specification, and to select those residues in just chain B it would be command: select /B:99,100,118-130,136,161,163,164 Help for atom specification in ChimeraX: <https://rbvi.ucsf.edu/chimerax/docs/user/commands/atomspec.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Dec 9, 2021, at 1:22 PM, Joao M.C. Teixeira via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:
Sorry for my previous email, it was sent too fast...
I am trying to select residues from a chain, and I am trying this command: select :99,100,118-130,136,161,163,164.B What is wrong? I am getting: Expected an objects specifier or a keyword
Thank you, JMCT
participants (2)
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Elaine Meng
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Joao M.C. Teixeira