Hi Dave, Yes, see command "bondcolor": <http://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/bondcolor.html> Best, Elaine ----- Elaine C. Meng, Ph.D. meng@cgl.ucsf.edu UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco http://www.cgl.ucsf.edu/home/meng/index.html On Jan 13, 2009, at 1:36 PM, David Chenoweth wrote:

Dear Chimera team,

Is it possible to color bonds / sticks independent of the atoms so that I could have colored balls corresponding to atom types but have all the sticks connecting the balls/atoms to be a different color or colors.

Thanks again, Dave