volume viewer issue
Hi, I am using chimera to visualize a stack of EM serial sections. I can load them into Chimera (as MRC file), but when I try to view the stack in the volume viewer w the "solids" option all I see is a white square.. w the mesh and surface options the stack shows up as a grainy image on which it's difficult to see any depth.. any suggestions? THanks, Matt
Hi Matt, Do you see a filled white square or just a white wire outline? Have you tried adjusting the "transfer function" -- that is moving the nodes of the yellow curve on the volume histogram that controls the brightness of voxels as a function of data value? If that doesn't make sense have a look at the Chimera manual page for volume data display, in particular, the "solid display" section: http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/volumeviewer/framev... Tom
participants (2)
-
Matthew Shawkey -
Thomas Goddard