Output of distance measurements
Dear all, I have a very primitive script to measure distances, like distance :1.a@ha :5.b@ha distance :1.a@ha :4.b@ha distance .... etc. I run the script in File --> Open and get the distances in the Structure Measurements panel and then Save. The output file list all the distances but, for my analysis, it would be better to keep the lines separated by a blank line, or something like this. Maybe this is possible by some change in my primtive script but I have no idea... Thanks for your help, Marco
Hi Marco, If you put the command echo between the distance commands, it will put a blank line in the Log. It worked when I tried it, at least! Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 11, 2018, at 2:17 AM, Marco Sette <sette@uniroma2.it> wrote:
Dear all,
I have a very primitive script to measure distances, like distance :1.a@ha :5.b@ha distance :1.a@ha :4.b@ha distance .... etc. I run the script in File --> Open and get the distances in the Structure Measurements panel and then Save. The output file list all the distances but, for my analysis, it would be better to keep the lines separated by a blank line, or something like this. Maybe this is possible by some change in my primtive script but I have no idea...
Thanks for your help, Marco
To use Elaine’s suggestion you have to use the Save button on the Reply Log, not the Save button on the Distances dialog. The only way to get blanks lines in that is to change Chimera’s Python code. —Eric Eric Pettersen UCSF Computer Graphics Lab
On Jan 11, 2018, at 10:07 AM, Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hi Marco, If you put the command
echo
between the distance commands, it will put a blank line in the Log. It worked when I tried it, at least! Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 11, 2018, at 2:17 AM, Marco Sette <sette@uniroma2.it> wrote:
Dear all,
I have a very primitive script to measure distances, like distance :1.a@ha :5.b@ha distance :1.a@ha :4.b@ha distance .... etc. I run the script in File --> Open and get the distances in the Structure Measurements panel and then Save. The output file list all the distances but, for my analysis, it would be better to keep the lines separated by a blank line, or something like this. Maybe this is possible by some change in my primtive script but I have no idea...
Thanks for your help, Marco
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Thanks Elaine and Eric, it works fine :) Best Marco Il 11/01/2018 20:23, Eric Pettersen ha scritto:
To use Elaine’s suggestion you have to use the Save button on the Reply Log, not the Save button on the Distances dialog. The only way to get blanks lines in that is to change Chimera’s Python code.
—Eric
Eric Pettersen UCSF Computer Graphics Lab
On Jan 11, 2018, at 10:07 AM, Elaine Meng <meng@cgl.ucsf.edu <mailto:meng@cgl.ucsf.edu>> wrote:
Hi Marco, If you put the command
echo
between the distance commands, it will put a blank line in the Log. It worked when I tried it, at least! Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 11, 2018, at 2:17 AM, Marco Sette <sette@uniroma2.it <mailto:sette@uniroma2.it>> wrote:
Dear all,
I have a very primitive script to measure distances, like distance :1.a@ha :5.b@ha distance :1.a@ha :4.b@ha distance .... etc. I run the script in File --> Open and get the distances in the Structure Measurements panel and then Save. The output file list all the distances but, for my analysis, it would be better to keep the lines separated by a blank line, or something like this. Maybe this is possible by some change in my primtive script but I have no idea...
Thanks for your help, Marco
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-- Dr.Marco Sette, Ph.D. Department of Chemical Sciences and Technology University of Rome, "Tor Vergata" via della Ricerca Scientifica, 00133, Rome, Italy e-mail: sette@uniroma2.it e-mail: m77it@yahoo.it Tel.: +39-0672594424 Fax: +39-0672594328 http://stc.uniroma2.it/?page_id=622&cn-entry-slug=marco-sette
participants (3)
-
Elaine Meng -
Eric Pettersen -
Marco Sette