hi! I am striving to perform voluertric filling of a crystal structure into an EM reconstruction. I have down loaded and complited the Linux_64 bit version. I first load my crystal structure and then the EM reconstruction on the same screen and set the EM reconstruction as DATa. I am not able to figure out where the FIT buttons is located in the pop up menus!!! I would be very grateful if you could help me sort out this issue! Thanks Jayant NB I am using the online manual to help me in this endeavour http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/fitmodels/fitmodels... Jayasundar Jayant James Postdoc, Department of Veterinary and Comparative Anatomy, Pharmacology and Physiology(VCAPP), Washington state university, Pullman 99164-6520, USA. http://www.chick.com/reading/tracts/0001/0001_01.asp Phone office:335-5937, Cell:1-509-432-5790
Hi Jayant, The Chimera guide to volume data display gives a step by step description of fitting atomic models in EM maps. http://www.cgl.ucsf.edu/chimera/tutorials/volumetour/volumetour.html#fitmode... Other descriptions on that page may be useful for looking at your EM data. The Chimera User's Guide is oriented towards giving complete descriptions of Chimera capabilities and is where you should look to get the fine details. Tom
Hello! One way to get this tool is to choose Tools... Volume Data... Fit Models in Maps from the Chimera menu. Near the top of the man page you mention, there is a link "several ways to start" that talks about all the different ways to start tools. I hope this helps, Elaine On Oct 4, 2006, at 4:13 PM, jayant_jacques wrote:
hi! I am striving to perform voluertric filling of a crystal structure into an EM reconstruction. I have down loaded and complited the Linux_64 bit version. I first load my crystal structure and then the EM reconstruction on the same screen and set the EM reconstruction as DATa. I am not able to figure out where the FIT buttons is located in the pop up menus!!! I would be very grateful if you could help me sort out this issue! Thanks Jayant NB I am using the online manual to help me in this endeavour http://www.cgl.ucsf.edu/chimera/docs/ContributedSoftware/fitmodels/ fitmodels.html
Jayasundar Jayant James Postdoc, Department of Veterinary and Comparative Anatomy, Pharmacology and Physiology(VCAPP), Washington state university, Pullman 99164-6520, USA. http://www.chick.com/reading/tracts/0001/0001_01.asp Phone office:335-5937, Cell:1-509-432-5790
_______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users
----- Elaine C. Meng, Ph.D. meng@cgl.ucsf.edu UCSF Computer Graphics Lab and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco http://www.cgl.ucsf.edu/home/meng/index.html
On Wed, 4 Oct 2006, jayant_jacques wrote:
I have down loaded and complited the Linux_64 bit version.
Please use the 32-bit version, the 64-bit version hasn't been updated in a long time and there have been lots of improvements and bug fixes since then. If your data won't fit in 32-bits, please let us know. Greg Couch UCSF Computer Graphics Lab
participants (4)
-
Elaine Meng -
Greg Couch -
jayant_jacques -
Thomas Goddard