Could anyone help with loading and displaying CNS or XPLOR electron density maps in Chimera. I have tried many times and also the dialog boxes in the user guide do not exactly correspond to the version (12/2004) of Chimera I have. Thanks. ____________________________________________________ Yahoo! Sports Rekindle the Rivalries. Sign up for Fantasy Football http://football.fantasysports.yahoo.com
Hi, I use mapman to convert CNS or X-PLOR format to BRIX or DSN6 for reading in chimera (I also have trouble opening CNS/X-PLOR formats in chimera v1.2105). You can get mapman from the rave package: ftp://xray.bmc.uu.se/pub/gerard/rave/rave_linux.tar.gz I think he has versions for irix, osx, and alpha also. If you're on windows you might want to try CCP4's windows version (ftp://ftp.ccp4.ac.uk/ccp4/current/binaries/setup.exe). Supposedly this includes a program called xdlmapman which is a graphical version of mapman (see http://o-info.bioxray.dk/pipermail/o-info/2002-February/005634.html). Hope that helps, Sabuj Pattanayek C. Parry wrote:
Could anyone help with loading and displaying CNS or XPLOR electron density maps in Chimera. I have tried many times and also the dialog boxes in the user guide do not exactly correspond to the version (12/2004) of Chimera I have.
Thanks.
____________________________________________________ Yahoo! Sports Rekindle the Rivalries. Sign up for Fantasy Football http://football.fantasysports.yahoo.com _______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users
Hi, Can you tell me what the error message is when you try to open CNS or XPLOR density maps in Chimera? The Chimera CNS/XPLOR file reader only handles ASCII format (as described in the Chimera manual). Perhaps you are trying to read a binary format file. If that is the problem, I may be able to add support for reading the binary format. Tom
participants (3)
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C. Parry
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Sabuj Pattanayek
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Thomas Goddard