Hello, I do not know how to open a discovery studio visualizer (.dsv) file in Chimera. Can you please help me with that? Thank you. Best regards, Simin
Hi Simin, Sorry, Chimera does not read dsv files (“DSV” can stand for different things, but Chimera doesn’t read any of them.) This page lists the kinds of files Chimera reads: <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/filetypes.html> Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Nov 26, 2018, at 9:46 AM, Tavangari, Simin <tavangari.simin@courrier.uqam.ca> wrote:
Hello, I do not know how to open a discovery studio visualizer (.dsv) file in Chimera. Can you please help me with that? Thank you. Best regards, Simin
Dear Elaine, I understand. Thanks. For basic student usage ( like superimposing, docking , etc), is Chimera as efficient as BIOVIA virtual discovery studio? I have MacBook and discovery is not compatible with Mac. So I’m looking for a pretty similar alternative. Your support is highly appreciated. Best regards, Simin ________________________________ From: Elaine Meng <meng@cgl.ucsf.edu> Sent: November 26, 2018 4:11:11 PM To: Tavangari, Simin Cc: chimera-users@cgl.ucsf.edu Subject: Re: [Chimera-users] dsv to Chimera format Hi Simin, Sorry, Chimera does not read dsv files (“DSV” can stand for different things, but Chimera doesn’t read any of them.) This page lists the kinds of files Chimera reads: <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/filetypes.html> Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Nov 26, 2018, at 9:46 AM, Tavangari, Simin <tavangari.simin@courrier.uqam.ca> wrote:
Hello, I do not know how to open a discovery studio visualizer (.dsv) file in Chimera. Can you please help me with that? Thank you. Best regards, Simin
Hi Simin, I don’t know anything about the BIOVIA software, sorry. They may not be similar. All I can say is that Chimera is not itself a docking program, but it is very popular for superposition, and for viewing/analysis of docking results output from other programs. Chimera superposition methods: <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/superposition.html> Chimera ViewDock tool for looking at docking outputs from other programs: <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/viewdock/framevd.h...> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/tutorials/vdtut.html> Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Nov 26, 2018, at 4:05 PM, Tavangari, Simin <tavangari.simin@courrier.uqam.ca> wrote:
Dear Elaine, I understand. Thanks. For basic student usage ( like superimposing, docking , etc), is Chimera as efficient as BIOVIA virtual discovery studio? I have MacBook and discovery is not compatible with Mac. So I’m looking for a pretty similar alternative. Your support is highly appreciated. Best regards, Simin From: Elaine Meng <meng@cgl.ucsf.edu> Sent: November 26, 2018 4:11:11 PM To: Tavangari, Simin Cc: chimera-users@cgl.ucsf.edu Subject: Re: [Chimera-users] dsv to Chimera format
Hi Simin, Sorry, Chimera does not read dsv files (“DSV” can stand for different things, but Chimera doesn’t read any of them.) This page lists the kinds of files Chimera reads: <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/filetypes.html>
Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Nov 26, 2018, at 9:46 AM, Tavangari, Simin <tavangari.simin@courrier.uqam.ca> wrote:
Hello, I do not know how to open a discovery studio visualizer (.dsv) file in Chimera. Can you please help me with that? Thank you. Best regards, Simin
Dear Elaine, Thank you this is very helpful. Best regards, Simin ________________________________ From: Elaine Meng <meng@cgl.ucsf.edu> Sent: November 27, 2018 11:47:55 AM To: Tavangari, Simin Cc: chimera-users Subject: Re: [Chimera-users] dsv to Chimera format Hi Simin, I don’t know anything about the BIOVIA software, sorry. They may not be similar. All I can say is that Chimera is not itself a docking program, but it is very popular for superposition, and for viewing/analysis of docking results output from other programs. Chimera superposition methods: <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/superposition.html> Chimera ViewDock tool for looking at docking outputs from other programs: <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/viewdock/framevd.h...> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/tutorials/vdtut.html> Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Nov 26, 2018, at 4:05 PM, Tavangari, Simin <tavangari.simin@courrier.uqam.ca> wrote:
Dear Elaine, I understand. Thanks. For basic student usage ( like superimposing, docking , etc), is Chimera as efficient as BIOVIA virtual discovery studio? I have MacBook and discovery is not compatible with Mac. So I’m looking for a pretty similar alternative. Your support is highly appreciated. Best regards, Simin From: Elaine Meng <meng@cgl.ucsf.edu> Sent: November 26, 2018 4:11:11 PM To: Tavangari, Simin Cc: chimera-users@cgl.ucsf.edu Subject: Re: [Chimera-users] dsv to Chimera format
Hi Simin, Sorry, Chimera does not read dsv files (“DSV” can stand for different things, but Chimera doesn’t read any of them.) This page lists the kinds of files Chimera reads: <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/filetypes.html>
Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Nov 26, 2018, at 9:46 AM, Tavangari, Simin <tavangari.simin@courrier.uqam.ca> wrote:
Hello, I do not know how to open a discovery studio visualizer (.dsv) file in Chimera. Can you please help me with that? Thank you. Best regards, Simin
participants (2)
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Elaine Meng -
Tavangari, Simin