Hello, I hope you are doing well. I obtained prediction models from I tasser and would like to visualize them on chimera. I was able to open them but i cannot open the sequence of amino acids. Do you perhaps know how to look at them? Thank you Yoel Get Outlook for Android<https://aka.ms/ghei36>
Hello Yoel, I am not sure what you mean. Maybe you are already showing the 3D structure(s), but you want to also see the amino acid sequence? In that case you can use menu: "Tools... Sequence... Sequence". If you have more than one chain open there will be a choice of which sequence(s) to show. If you only have one chain open, the sequence will show immediately. Each sequence will be displayed in a separate window. See the Help for the Sequence tool: <https://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/multalignviewer/framemav.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Nov 10, 2020, at 4:38 PM, Sitbon, Yoel <yxs454@miami.edu> wrote:
Hello,
I hope you are doing well.
I obtained prediction models from I tasser and would like to visualize them on chimera. I was able to open them but i cannot open the sequence of amino acids. Do you perhaps know how to look at them?
Thank you
Yoel
Get Outlook for Android _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: https://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
Hi Elaine, No worries I was able to do what I wanted. Thank you Yoel Get Outlook for Android<https://aka.ms/ghei36> ________________________________ From: Elaine Meng <meng@cgl.ucsf.edu> Sent: Tuesday, November 10, 2020 8:15:05 PM To: Sitbon, Yoel <yxs454@miami.edu> Cc: chimera-users@cgl.ucsf.edu <chimera-users@cgl.ucsf.edu> Subject: [EXTERNAL] Re: [Chimera-users] I tasser models CAUTION: This email originated from outside the organization. DO NOT CLICK ON LINKS or OPEN ATTACHMENTS unless you know and trust the sender. Hello Yoel, I am not sure what you mean. Maybe you are already showing the 3D structure(s), but you want to also see the amino acid sequence? In that case you can use menu: "Tools... Sequence... Sequence". If you have more than one chain open there will be a choice of which sequence(s) to show. If you only have one chain open, the sequence will show immediately. Each sequence will be displayed in a separate window. See the Help for the Sequence tool: <https://nam01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.rbvi.ucsf.edu%2Fchimera%2Fdocs%2FContributedSoftware%2Fmultalignviewer%2Fframemav.html&data=04%7C01%7Cyxs454%40miami.edu%7C7b36a81f618b4a861b4008d885df3ad0%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C637406541108871937%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=3d9e2avMc%2B0fXtJjvSf0FuQrgmS8ogF7sofFyXyPM2Q%3D&reserved=0> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Nov 10, 2020, at 4:38 PM, Sitbon, Yoel <yxs454@miami.edu> wrote:
Hello,
I hope you are doing well.
I obtained prediction models from I tasser and would like to visualize them on chimera. I was able to open them but i cannot open the sequence of amino acids. Do you perhaps know how to look at them?
Thank you
Yoel
Get Outlook for Android _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: https://nam01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fplato.cgl.ucsf.edu%2Fmailman%2Flistinfo%2Fchimera-users&data=04%7C01%7Cyxs454%40miami.edu%7C7b36a81f618b4a861b4008d885df3ad0%7C2a144b72f23942d48c0e6f0f17c48e33%7C0%7C0%7C637406541108871937%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=QH44aDFXJ90HYTfiMqjl8QN91CvWsqVKU0kY8nVoGdg%3D&reserved=0
participants (2)
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Elaine Meng -
Sitbon, Yoel