Hi Vicky, This is probably a problem with your Chimera preferences file. If you remove (or better just rename) your preferences file then Chimera will create a new one. The preferences file is in your home directory in the hidden directory ".chimera" on Mac and Linux. .chimera/preferences To find the file on Windows start Chimera and use Favorites / Preferences and it will be listed under Category Preferences. Tom Victoria James wrote:

Hi there,

I am having a problem with the chimera command line. Whenever I try and tell it to do anything it says "unrecognised command", e.g. even the most basic "sel" I get prompted with "Unrecognized command: 'sel'"

This has only started happening today.. I has a crisis with my computer yesterday and I had to restore all the files from a recent back up which may explain the problem, but I'm unsure how to fix it. I have just tried downloading the program again, but I am still getting the same problem.

Is anyone able to help?

Thanks in advance. Vicky _______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users