For minimization, you would need to use Chimera. I don't know why it isn't working for you. To figure it out, we would need more information, e.g. when you have the problem, use menu: Help... Report a Bug and fill out the form to send us more information. Regards, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco

On Jan 11, 2024, at 2:03 AM, DR. SHAZIA DAWOOD via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:

Dear Sir , I want to minimize ligand and protein energy (pre docking step) . which chimera should be downloaded. I have an ucsf chimera for windows but currently it is not working. mention me chimera for my laptop windows 10. Thanking You

-- Dr. Shazia Dawood Assistant Professor Pharmacy And Allied Health Sciences M.Phil. PhD. Biochemistry (UOK)

North Karachi Campus, Plot No. 204-205 Sector 7B/1, North Karachi, Karachi, Pakistan. 7580 03319764733 +9221-36723221-6/111-11-IQRA shazia.dawood@iqra.edu.pk

Hello, Just sending an image of the error is not useful. Instead, when you get the error, please save the session with the molecule and the error and then use Chimera menu: Help... Report a Bug and attach the session file. Just looking at the image, it seems like the molecule might be flat, like a 2D drawing instead of a 3D structure of a molecule. That kind of 2D structure usually has completely wrong bond lengths as well, so that might be the cause of the error. You need to use a 3D structure of the molecule. I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco

On Jan 12, 2024, at 1:36 AM, DR. SHAZIA DAWOOD via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:

Thank you for your response. I attached a file to find out the error. My research work is pending due to the error. Please help me out. Thanking you

On Thu, Jan 11, 2024 at 9:29 PM Elaine Meng <meng@cgl.ucsf.edu> wrote: For minimization, you would need to use Chimera. I don't know why it isn't working for you. To figure it out, we would need more information, e.g. when you have the problem, use menu: Help... Report a Bug and fill out the form to send us more information. Regards, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco

...

On Jan 11, 2024, at 2:03 AM, DR. SHAZIA DAWOOD via Chimera-users <chimera-users@cgl.ucsf.edu> wrote:

Dear Sir , I want to minimize ligand and protein energy (pre docking step) . which chimera should be downloaded. I have an ucsf chimera for windows but currently it is not working. mention me chimera for my laptop windows 10. Thanking You

-- Dr. Shazia Dawood Assistant Professor Pharmacy And Allied Health Sciences M.Phil. PhD. Biochemistry (UOK)

North Karachi Campus, Plot No. 204-205 Sector 7B/1, North Karachi, Karachi, Pakistan. 7580 03319764733 +9221-36723221-6/111-11-IQRA shazia.dawood@iqra.edu.pk

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