MINIMIZATION BY CHIMERA
Dear Instructor Please guide meabout how minization is performed of protein Structure from chimera.Guide me step by step kindly. Waitig for your positive response. Thank you Reagrds Jonathan Javid
Hi Jonathan, You just set the options you want and then click Apply or OK on some dialogs. Each dialog has a Help button that you can click to see the explanation of all the options. You can use menu: Tools... Structure Editing... Minimize Structure, or the command "minimize." Here is the Help page for Minimize Structure, the same thing that you would get by clicking the Help button on that tool. <http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/minimize/minimize.html> Searching finds a long YouTube video "energy minimization in UCSF Chimera" ... maybe useful to you. I have not viewed it. <https://www.youtube.com/watch?v=37rgX2MMhZ0> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Apr 9, 2020, at 12:46 AM, Jonathan Javid <jonathanjavid257@gmail.com> wrote:
Dear Instructor
Please guide meabout how minization is performed of protein Structure from chimera.Guide me step by step kindly.
Waitig for your positive response. Thank you
Reagrds Jonathan Javid _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
hey Elaine Meng Thanks, I'll check them out. Regards Jonathan Javid On Thu, Apr 9, 2020 at 10:47 PM Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hi Jonathan, You just set the options you want and then click Apply or OK on some dialogs. Each dialog has a Help button that you can click to see the explanation of all the options.
You can use menu: Tools... Structure Editing... Minimize Structure, or the command "minimize."
Here is the Help page for Minimize Structure, the same thing that you would get by clicking the Help button on that tool. < http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/minimize/minimize....
Searching finds a long YouTube video "energy minimization in UCSF Chimera" ... maybe useful to you. I have not viewed it. <https://www.youtube.com/watch?v=37rgX2MMhZ0>
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Apr 9, 2020, at 12:46 AM, Jonathan Javid <jonathanjavid257@gmail.com> wrote:
Dear Instructor
Please guide meabout how minization is performed of protein Structure from chimera.Guide me step by step kindly.
Waitig for your positive response. Thank you
Reagrds Jonathan Javid _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
participants (2)
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Elaine Meng -
Jonathan Javid