
How can color volume by value with binning several values into single color? I achived the effect partialy by opening several times the same map. set different thresholds and colors to each one and playing with Per-Model Clipping tool, but it have some drawbacks. Planes can't be at exact same level because I observe artifacts. So I tried to move slightly inner layers upp, but still I observe "staris" effect. I also tried with Surface color tool, but it uses interpolation and blends colors togather. In other words I need something like this: https://1.bp.blogspot.com/-5B5ueLHCBPY/T4II4IddvwI/AAAAAAAAB_w/rYwqsJNldY0/s... instead of something like this: https://i.stack.imgur.com/hQmry.png -- pozdrawiam serdecznie Michał Kadlof <m.kadlof@cent.uw.edu.pl>

Hi Michał, Just to clarify the previous answer. Surface color will only do a gradual coloring, not discrete. However, you can approximate the discrete coloring with somewhat more effort, by putting the same color at the top and bottom of each range, for example: white 0 white 0.99 red 1.0 red 1.99 […] You can also try using a finer triangulation on that surface cap although that will increase the computational load for moving the clipping plane and rendering the colors. I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Dec 16, 2016, at 3:58 AM, Michał Kadlof <m.kadlof@cent.uw.edu.pl> wrote:
How can color volume by value with binning several values into single color?
I achived the effect partialy by opening several times the same map. set different thresholds and colors to each one and playing with Per-Model Clipping tool, but it have some drawbacks. Planes can't be at exact same level because I observe artifacts. So I tried to move slightly inner layers upp, but still I observe "staris" effect.
I also tried with Surface color tool, but it uses interpolation and blends colors togather.
In other words I need something like this: https://1.bp.blogspot.com/-5B5ueLHCBPY/T4II4IddvwI/AAAAAAAAB_w/rYwqsJNldY0/s...
instead of something like this: https://i.stack.imgur.com/hQmry.png
-- pozdrawiam serdecznie Michał Kadlof <m.kadlof@cent.uw.edu.pl> _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
participants (2)
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Elaine Meng
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Michał Kadlof