
Thanks that is a useful function I hadn't explored. However, how to you un-tile to go back to a previously aligned system? Thanks, Jim
Message: 4 Date: Wed, 19 Mar 2008 16:53:11 +0530 From: "Bharat Yadav" <bharatbioinformaticshau@gmail.com> Subject: [Chimera-users] Requesting to solve my poblem To: chimera-users@cgl.ucsf.edu Message-ID: <e162fe4e0803190423k5651193amf41e192251b613c3@mail.gmail.com> Content-Type: text/plain; charset=ISO-8859-1
Hello Sir / Madam
Good Evening
My name is Bharat Yadav and I am perusing Master's Degree in Bioinformatics from Chaudhary Charan Singh Haryana Agriculrual University - Hisar (India). I am working here on Molecular Modeling. With a long time I am using UCSF Chimera. It is the one of wonderful Molecular visiualization software haivng some very peculear features. Respected Sir / Madam, In my present work I am facing a bit problem. Hoping form you to help regarding this. My problem is as follows. I have generated five models of protein. when I open all these modles these were overlapping each other. I want to view all these five models in a single panel non overlapping. I mean I want to view these 3D models in panel as follows ----------------------------------------- | | | | | | | Model 1 | Model 2 | | | | ----------------------------------------- | | | | | | | Model 3 | Model 4 | | | | ----------------------------------------- | | | | | | | Model 5 | Model 6 | | | | -----------------------------------------
Hope that you now easily understand what actually I want. Please Help me regarding this and mail me its solution or steps or commands for this task. Please free to ask any question.
Thanks in anticipation
Warm regards from Bharat Yadav
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Message: 5 Date: Wed, 19 Mar 2008 10:11:52 -0700 From: Elaine Meng <meng@cgl.ucsf.edu> Subject: Re: [Chimera-users] Requesting to solve my poblem To: "Bharat Yadav" <bharatbioinformaticshau@gmail.com> Cc: chimera-users@cgl.ucsf.edu Message-ID: <37BB555C-E967-43BB-B6EA-5CD8A75853FD@cgl.ucsf.edu> Content-Type: text/plain; charset=US-ASCII; delsp=yes; format=flowed
Hi Bharat,
Thanks for your kind words! I think you just need to use "tile" in the Model Panel. Open Model Panel (Favorites... Model Panel). In there, choose all 5 models on the left side. Then, on the right, change the menu from "frequently used" to "infrequently used" - now there should be a "tile" button on the right - try using that.
I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. meng@cgl.ucsf.edu UCSF Computer Graphics Lab and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco http://www.cgl.ucsf.edu/home/meng/index.html

Hi Jim, It is not exactly the same as "untile," but I use the command "reset" - that puts all models in their untransformed state. However, if you had previously matched the models or gotten them in your favorite orientation, you might not want to use reset. Other possibilities are (a) (requiring foresight) use the "savepos position-name" before tiling and then "reset-position-name" afterward (b) use Undo Move (under Tools... Movement) - I recommend this last because although it puts the models back on top of each other, it did not restore the pre-existing scale and translation when I tried it just now... I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. meng@cgl.ucsf.edu UCSF Computer Graphics Lab and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco http://www.cgl.ucsf.edu/home/meng/index.html On Mar 19, 2008, at 12:43 PM, Jim Nettles wrote:
Thanks that is a useful function I hadn't explored. However, how to you un-tile to go back to a previously aligned system? Thanks, Jim

Me again, too much rushing led to typing errors: On Mar 19, 2008, at 12:54 PM, Elaine Meng wrote:
It is not exactly the same as "untile," but I use the command "reset" - that puts all models in their untransformed state. However, if you had previously matched the models or gotten them in your favorite orientation, you might not want to use reset.
I should have said "you might not want to reset to the default positions."
(a) (requiring foresight) use the "savepos position-name" before tiling and then "reset-position-name" afterward
the *command* "savepos position-name" and then the command "reset position-name" (no hyphen after "reset"). Sorry about that! Elaine
participants (2)
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Elaine Meng
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Jim Nettles