The problem you encountered is typically caused by not running the "make install" step of the installation. This step creates the target directories for the binaries and support files (including "radii"). The "GNUmakefile" contains the default target directory path, so you should edit the paths (BINDIR, LIBDIR and MANDIR) near the top of this file, then rebuild and install dms (run "make clean ; make install"). The executable you should be using is BINDIR/dms, which should find all the necessary files such as "radii". Conrad 63668@unimo.it wrote:

DMS is the only program requested to generate DOCK input files I was not able to install. I read something similar in this same mailing list. The first problem I encountered was an error message referred to "radii" directory. Thus I created the radii directory and I put radii.proto file into it. Now the error message is "Unknown atom type N", and by eliminating N atoms from my input file the new error message is "Unknown atom type CA", and so on. It seems that the program is not able to recognize atoms with their atomic radii, thus I think that the problem is still in this file. Any suggestion?

Thank you, Valeria

---------------------------------------------------------------- This message was sent using IMP, the Internet Messaging Program.

_______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users