Hello, I am using UCSF Chimera, candidate version 1.13 LInux64. When I load an MD Movie with prmtop and netcdf files (both created using Amber) the software crashes and gives segmentation fault error. In the trajectory dialog box the netcdf format is not shown as an option. With the previous version, I was able to open those files. Regards.
Hi David, The files I have on hand work fine in both versions. There were no changes in Amber-format trajectory handling between the 1.12 and 1.13 releases. Are the files involved huge? (i.e. is there any chance you can send them to me...) —Eric Eric Pettersen UCSF Computer Graphics Lab
On Jul 4, 2018, at 10:24 AM, David Sáez <davidsaez@udec.cl> wrote:
Hello, I am using UCSF Chimera, candidate version 1.13 LInux64. When I load an MD Movie with prmtop and netcdf files (both created using Amber) the software crashes and gives segmentation fault error. In the trajectory dialog box the netcdf format is not shown as an option.
With the previous version, I was able to open those files.
Regards. _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
Hi Eric, Thanks for your help. The trajectories were huge, as you supposed, so after stripping some water molecules I was able to visualize the dynamics correctly. Thanks again! On Thu, Jul 5, 2018 at 5:32 PM, Eric Pettersen <pett@cgl.ucsf.edu> wrote:
Hi David, The files I have on hand work fine in both versions. There were no changes in Amber-format trajectory handling between the 1.12 and 1.13 releases. Are the files involved huge? (i.e. is there any chance you can send them to me...)
—Eric
Eric Pettersen UCSF Computer Graphics Lab
On Jul 4, 2018, at 10:24 AM, David Sáez <davidsaez@udec.cl> wrote:
Hello, I am using UCSF Chimera, candidate version 1.13 LInux64. When I load an MD Movie with prmtop and netcdf files (both created using Amber) the software crashes and gives segmentation fault error. In the trajectory dialog box the netcdf format is not shown as an option.
With the previous version, I was able to open those files.
Regards. _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu Manage subscription: http://plato.cgl.ucsf.edu/ mailman/listinfo/chimera-users
Perhaps it was a memory issue somehow. Glad it’s working! —Eric
On Jul 5, 2018, at 7:45 PM, David Sáez <davidsaez@udec.cl> wrote:
Hi Eric,
Thanks for your help. The trajectories were huge, as you supposed, so after stripping some water molecules I was able to visualize the dynamics correctly.
Thanks again!
On Thu, Jul 5, 2018 at 5:32 PM, Eric Pettersen <pett@cgl.ucsf.edu <mailto:pett@cgl.ucsf.edu>> wrote: Hi David, The files I have on hand work fine in both versions. There were no changes in Amber-format trajectory handling between the 1.12 and 1.13 releases. Are the files involved huge? (i.e. is there any chance you can send them to me...)
—Eric
Eric Pettersen UCSF Computer Graphics Lab
On Jul 4, 2018, at 10:24 AM, David Sáez <davidsaez@udec.cl <mailto:davidsaez@udec.cl>> wrote:
Hello, I am using UCSF Chimera, candidate version 1.13 LInux64. When I load an MD Movie with prmtop and netcdf files (both created using Amber) the software crashes and gives segmentation fault error. In the trajectory dialog box the netcdf format is not shown as an option.
With the previous version, I was able to open those files.
Regards. _______________________________________________ Chimera-users mailing list: Chimera-users@cgl.ucsf.edu <mailto:Chimera-users@cgl.ucsf.edu> Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users <http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users>
participants (2)
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David Sáez -
Eric Pettersen