Begin forwarded message:
From: Devleena Mazumder <devleena@chem.ucsb.edu> Date: Fri Nov 14, 2003 6:04:37 PM US/Pacific To: Robin Parsons <rparsons@cgl.ucsf.edu> Subject: Re: MidasPlus version 2.1 (1997/02/04)
Dear Robin, Thanks for your email. I have installed Chimera. Its easier to use than Midas. Unfortunately, I dont see the label3d option in it that was available with Midas. So, I am unable to get labels in neon. Thanks Devleena
On Thu, 6 Nov 2003, Robin Parsons wrote:
:>To: Devleena, :>University of California, Santa Barbara, :> :>Thank you for your interest in our MidasPlus molecular modeling :>software. You should know, however, that MidasPlus 2.1 is the final :>version of MidasPlus and will not be developed further. You may wish :>to explore our next generation of molecular modeling software, Chimera. :> You can look over Chimera's capabilities on our web site at: :> :>www.cgl.ucsf.edu/chimera/ :> :>In addition, Chimera is offered at no cost to educational and :>non-profit institutions. :> :>Please contact me if you have any further questions. :> :>Robin Parsons :>UCSF Computer Graphics Lab :>Resource for Biocomputing, Visualization and Informatics :>600 16th St., Room N-472B, Box 2240 :>San Francisco, CA 94143-2240 :>Commercial Carrier Zip Code: 94107 :>tel. 415-476-1540 :>fax 415-502-1755 :>rparsons@cgl.ucsf.edu :> :>
_______________________________________________________________ DEVLEENA MAZUMDER-SHIVAKUMAR PhD Candidate, Dept of Chemistry & Biochemistry UNIVERSITY OF CALIFORNIA SANTA BARBARA http://www.chem.ucsb.edu/~devleena/
**Although the past gives us lessons, it does not give the whole answer to what must be done now.**
Robin Parsons UCSF Computer Graphics Lab Resource for Biocomputing, Visualization and Informatics Assistant to Thomas Ferrin, PhD 600 16th St., Room N-472B, Box 2240 San Francisco, CA 94143-2240 Commercial Carrier Zip Code: 94158 tel. 415-476-1540 fax 415-502-1755 rparsons@cgl.ucsf.edu
Dear Devleena, For now, Chimera does not have a label3d-like tool, nor is it likely to in the near future (though in the long term it could happen). For now, you are going to have to take the neon/conic image and label it "by hand" in Photoshop or some such. We do anticipate adding an "ilabel"-like tool soon (so that arbitrary 2D labels can be placed on the Chimera image), but even that won't help here since those won't be transmitted through to neon or conic either. Sorry I couldn't be of more help. Eric Pettersen UCSF Computer Graphics Lab pett@cgl.ucsf.edu http://www.cgl.ucsf.edu On Monday, November 17, 2003, at 10:38 AM, Robin Parsons wrote:
Begin forwarded message:
From: Devleena Mazumder <devleena@chem.ucsb.edu> Date: Fri Nov 14, 2003 6:04:37 PM US/Pacific To: Robin Parsons <rparsons@cgl.ucsf.edu> Subject: Re: MidasPlus version 2.1 (1997/02/04)
Dear Robin, Thanks for your email. I have installed Chimera. Its easier to use than Midas. Unfortunately, I dont see the label3d option in it that was available with Midas. So, I am unable to get labels in neon. Thanks Devleena
On Thu, 6 Nov 2003, Robin Parsons wrote:
:>To: Devleena, :>University of California, Santa Barbara, :> :>Thank you for your interest in our MidasPlus molecular modeling :>software. You should know, however, that MidasPlus 2.1 is the final :>version of MidasPlus and will not be developed further. You may wish :>to explore our next generation of molecular modeling software, Chimera. :> You can look over Chimera's capabilities on our web site at: :> :>www.cgl.ucsf.edu/chimera/ :> :>In addition, Chimera is offered at no cost to educational and :>non-profit institutions. :> :>Please contact me if you have any further questions. :> :>Robin Parsons :>UCSF Computer Graphics Lab :>Resource for Biocomputing, Visualization and Informatics :>600 16th St., Room N-472B, Box 2240 :>San Francisco, CA 94143-2240 :>Commercial Carrier Zip Code: 94107 :>tel. 415-476-1540 :>fax 415-502-1755 :>rparsons@cgl.ucsf.edu :> :>
_______________________________________________________________ DEVLEENA MAZUMDER-SHIVAKUMAR PhD Candidate, Dept of Chemistry & Biochemistry UNIVERSITY OF CALIFORNIA SANTA BARBARA http://www.chem.ucsb.edu/~devleena/
**Although the past gives us lessons, it does not give the whole answer to what must be done now.**
Robin Parsons UCSF Computer Graphics Lab Resource for Biocomputing, Visualization and Informatics Assistant to Thomas Ferrin, PhD 600 16th St., Room N-472B, Box 2240 San Francisco, CA 94143-2240 Commercial Carrier Zip Code: 94158 tel. 415-476-1540 fax 415-502-1755 rparsons@cgl.ucsf.edu
_______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users
Hi, I wish to be a little more positive about label3d-like functionality in chimera. Assuming that you are willing to live with what chimera produces, rather than use neon or conic, then there is a good chance that the functionality that you need will be there in the next 6 months. The font software that we use has the capability to do what you want, but we need to expose the functionality to our Python layer and work out an appropriate GUI. Our next step, however, is to work on reducing how much memory chimera uses and figure out how to speed chimera up. I've created an entry in our bug database for your request so that you will be notified when our internal version of chimera has label3d functionality. The next snapshot or production release after that email will contain the functionality. There is also a slight chance that I'll incorporate the label3d functionality while we're working on optimizing chimera. Greg Couch UCSF Computer Graphics Lab gregc@cgl.ucsf.edu On Mon, 17 Nov 2003, Eric Pettersen wrote:
Date: Mon, 17 Nov 2003 14:48:54 -0800 From: Eric Pettersen <pett@cgl.ucsf.edu> Reply-To: chimera-users@cgl.ucsf.edu To: chimera-users@cgl.ucsf.edu Subject: [Chimera-users] label3d
Dear Devleena, For now, Chimera does not have a label3d-like tool, nor is it likely to in the near future (though in the long term it could happen). For now, you are going to have to take the neon/conic image and label it "by hand" in Photoshop or some such. We do anticipate adding an "ilabel"-like tool soon (so that arbitrary 2D labels can be placed on the Chimera image), but even that won't help here since those won't be transmitted through to neon or conic either. Sorry I couldn't be of more help.
Eric Pettersen UCSF Computer Graphics Lab pett@cgl.ucsf.edu http://www.cgl.ucsf.edu
On Monday, November 17, 2003, at 10:38 AM, Robin Parsons wrote:
Begin forwarded message:
From: Devleena Mazumder <devleena@chem.ucsb.edu> Date: Fri Nov 14, 2003 6:04:37 PM US/Pacific To: Robin Parsons <rparsons@cgl.ucsf.edu> Subject: Re: MidasPlus version 2.1 (1997/02/04)
Dear Robin, Thanks for your email. I have installed Chimera. Its easier to use than Midas. Unfortunately, I dont see the label3d option in it that was available with Midas. So, I am unable to get labels in neon. Thanks Devleena
On Thu, 6 Nov 2003, Robin Parsons wrote:
:>To: Devleena, :>University of California, Santa Barbara, :> :>Thank you for your interest in our MidasPlus molecular modeling :>software. You should know, however, that MidasPlus 2.1 is the final :>version of MidasPlus and will not be developed further. You may wish :>to explore our next generation of molecular modeling software, Chimera. :> You can look over Chimera's capabilities on our web site at: :> :>www.cgl.ucsf.edu/chimera/ :> :>In addition, Chimera is offered at no cost to educational and :>non-profit institutions. :> :>Please contact me if you have any further questions. :> :>Robin Parsons :>UCSF Computer Graphics Lab :>Resource for Biocomputing, Visualization and Informatics :>600 16th St., Room N-472B, Box 2240 :>San Francisco, CA 94143-2240 :>Commercial Carrier Zip Code: 94107 :>tel. 415-476-1540 :>fax 415-502-1755 :>rparsons@cgl.ucsf.edu :> :>
_______________________________________________________________ DEVLEENA MAZUMDER-SHIVAKUMAR PhD Candidate, Dept of Chemistry & Biochemistry UNIVERSITY OF CALIFORNIA SANTA BARBARA http://www.chem.ucsb.edu/~devleena/
**Although the past gives us lessons, it does not give the whole answer to what must be done now.**
Robin Parsons UCSF Computer Graphics Lab Resource for Biocomputing, Visualization and Informatics Assistant to Thomas Ferrin, PhD 600 16th St., Room N-472B, Box 2240 San Francisco, CA 94143-2240 Commercial Carrier Zip Code: 94158 tel. 415-476-1540 fax 415-502-1755 rparsons@cgl.ucsf.edu
_______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users
_______________________________________________ Chimera-users mailing list Chimera-users@cgl.ucsf.edu http://www.cgl.ucsf.edu/mailman/listinfo/chimera-users
participants (3)
-
Eric Pettersen -
Greg Couch -
Robin Parsons