representing additional residues over ribbons

When I try repr sphere :64 or repr stick :64 over the default presentation of my protein in ribbons [the heme group is in sticks, as are automatically selected residues in close proximity], as suggested in today's user mail, it doesn't work. It only seems to work if all atoms of the protein are displayed. I can only reset the display mode of the residues Chimera has chosen to show in addition to ribbons using these commands on the default mostly-ribbon display. How do I get the protein mostly in ribbons with a few residues in stick or ball & stick? While I haven't worked through the entire tutorials referenced in today's mail, the examples of repr shown early on do not do this; they start from a display of all the protein's atoms. Thanks! Irene Newhouse

Hi Irene, I'm not sure I understand your question. The "repr" command only changes the style of the residue, regardless of whether the residue is displayed -- it won't display it. To display it, you would use a command like: display :64 Similarly, you could undisplay all atoms/bonds with ~display or undisplay selectively, for example ~display :hem I hope this helps, Elaine ---------- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Aug 16, 2010, at 12:25 PM, Irene Newhouse wrote:
When I try repr sphere :64 or repr stick :64 over the default presentation of my protein in ribbons [the heme group is in sticks, as are automatically selected residues in close proximity], as suggested in today's user mail, it doesn't work. It only seems to work if all atoms of the protein are displayed. I can only reset the display mode of the residues Chimera has chosen to show in addition to ribbons using these commands on the default mostly-ribbon display. How do I get the protein mostly in ribbons with a few residues in stick or ball & stick? While I haven't worked through the entire tutorials referenced in today's mail, the examples of repr shown early on do not do this; they start from a display of all the protein's atoms.
Thanks! Irene Newhouse

Yes, that *was* the mental short - I wasn't using display to turn them on. Thanks! Irene
Subject: Re: [Chimera-users] representing additional residues over ribbons From: meng@cgl.ucsf.edu Date: Mon, 16 Aug 2010 13:25:11 -0700 CC: chimera-users@cgl.ucsf.edu To: einew@hotmail.com
Hi Irene, I'm not sure I understand your question. The "repr" command only changes the style of the residue, regardless of whether the residue is displayed -- it won't display it. To display it, you would use a command like:
display :64
Similarly, you could undisplay all atoms/bonds with
~display
or undisplay selectively, for example
~display :hem
I hope this helps, Elaine ----------
participants (2)
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Elaine Meng
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Irene Newhouse