Thanks for this. I tried, still the result is the same. I'm attaching two snapshots in case it helps with the diagnostics. All the best George On Dec 5, 2011, at 9:58 PM, turk@lmb.uni-muenchen.de wrote:

have you tried:

...

distance model_number:residue_A@atom model_number:residue_B@atom

George Tzotzos <gtzotzos@me.com> wrote :

...

I'm trying to plot the distance between two atoms is a MD trajectory.

I use the command line to select, for example :124@H :121@O

The window in MD Plots fails to show my selection.

Is there something I get wrong? Your help will be much appreciated

Regards

George

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