HI How to make the figures in attachment, which highlight part of a structure. Thanks very much for advise. -- Liuqing Chen School of Life Science & Biotechnology Minhang Campus Shanghai Jiao Tong University No. 800 Dongchuan Road Shanghai 200240 P.R. China Tel: +86 21 34207247
Hi Liuqing Chen, In the figure you sent, the part of the ribbon that is highlighted is non-transparent and the rest of the ribbon is partly transparent. For example, if you have already selected the part you want to highlight, then you could invert selection and set transparency of the non-highlighted part, commands something like: sel invert transparency 80 sel ~sel You would probably want to turn off depth-cueing because that also gives a dimming effect, e.g. command: ~set depthcue There are different paths to the same result, such as specifying residues directly instead of using a selection: transp 80 #0:45-188.A Of course you can use a different number than 80, or only make ribbons (not atoms) transparent, or only surface, etc. Details in the manual. <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/transparency.html> I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Jul 30, 2016, at 12:31 AM, 陈柳青 <519198561@163.com> wrote:
HI How to make the figures in attachment, which highlight part of a structure. Thanks very much for advise. -- Liuqing Chen School of Life Science & Biotechnology Minhang Campus Shanghai Jiao Tong University No. 800 Dongchuan Road Shanghai 200240 P.R. China Tel: +86 21 34207247
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Hi elaine You are right! Thanks very much. Sincerely Liuqing 发自 网易邮箱大师 在2016年07月30日 23:55 ，Elaine Meng写道： Hi Liuqing Chen, In the figure you sent, the part of the ribbon that is highlighted is non-transparent and the rest of the ribbon is partly transparent. For example, if you have already selected the part you want to highlight, then you could invert selection and set transparency of the non-highlighted part, commands something like: sel invert transparency 80 sel ~sel You would probably want to turn off depth-cueing because that also gives a dimming effect, e.g. command: ~set depthcue There are different paths to the same result, such as specifying residues directly instead of using a selection: transp 80 #0:45-188.A Of course you can use a different number than 80, or only make ribbons (not atoms) transparent, or only surface, etc. Details in the manual. <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/transparency.html>; I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab Department of Pharmaceutical Chemistry University of California, San Francisco On Jul 30, 2016, at 12:31 AM, 陈柳青 <519198561@163.com> wrote:
HI How to make the figures in attachment, which highlight part of a structure. Thanks very much for advise. -- Liuqing Chen School of Life Science & Biotechnology Minhang Campus Shanghai Jiao Tong University No. 800 Dongchuan Road Shanghai 200240 P.R. China Tel: +86 21 34207247
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participants (2)
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Elaine Meng -
陈柳青