Dear ChimeraX team,
I want to select only the sidechains of a protein in order to visually outline them for a figure. This isn't an issue if cartoons are turned off, because I can select the only sidechains I want and use the command:
`sel sel & sidechain`
and I outline them in a nice way with...
`graphics sel col black width 2`
However, if cartoons are turned on then this won't select just the sidechain, but select a portion of the cartoon backbone too. I'm not sure how to specify this.
Ideally I want a transparent cartoon with opaque sidechains, and then have only the sidechains selected. Please see the images attached for examples of what I'm referring to.
Many thanks,
James

-- James Lingford | Research Officer, Greening LabDepartment of Microbiology, Monash Biomedicine Discovery Institute