Dear Tom and Elaine, Thanks a lot for your favorable reply. I will most likely follow Tom's idea: do seq fit manually. Thanks and have a nice day, Yanhe On Wed, Sep 21, 2022, 1:07 PM Elaine Meng <meng@cgl.ucsf.edu> wrote:
Hi Yanhe, I could not reproduce this problem. Even if I have the two copies of the same atomic model in exactly the same place before I run the command:
fitmap #2,3 inMap #1 seq 2 res 3.7
... they go to different places. But if you use "shift false" it will prevent shifting during fitting, so I don't think you want to use that option. I hope this helps, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Department of Pharmaceutical Chemistry University of California, San Francisco
On Sep 21, 2022, at 8:17 AM, Yanhe Zhao via ChimeraX-users < chimerax-users@cgl.ucsf.edu> wrote:
Greeting there developer,
I am using fitmap command of chimerax to fit pdb to map, the command as below: fitmap #2,3 inMap #1 seq 2 res 3.7 #2 and #3 are copy of each other and I manually placed them in different positions in map, #2 and #3 come to same position after the command running, I had shift option false, but come to same result. I remember it works in chimera. Could you please point me out?
Thanks and have a nice day, Yanhe