Dear ChimeraX Developers,

I'm working on visualizing a protein-ligand complex with potential π-stacking interactions. To measure the distance between the centroids of two benzene rings (one in the protein residue, one in the ligand), I used the following workflow:

  1. define centroid1
  2. define centroid2
  3. distance centroid1 centroid2 (to measure and show the distance between the centroids)

My issue: When I try to hide centroid1 centroid2 to generate a cleaner image showing only the distance measurement (the dashed line and label), hiding the centroid points also automatically hides the distance object.

Question: How can I hide only the centroid markers (points) while keeping the distance measurement (the dashed line and its label) visible for visualization?

Is there a specific command or GUI manipulation to separate these visual elements? I'd appreciate any guidance on resolving this.

Thank you for your help and your excellent tool.

Best regards,

Nan


Nan Zhang
zhangnan@nankai.edu.cn