$ module load virtualgl Loading virtualgl/2.5.0 Loading requirement: libjpeg-turbo/1.4.2
$ vglrun ./ChimeraX
NOTE: available bundle cache has not been initialized yet WARNING: GBM is not supported with the current configuration. Fallback to Vulkan rendering in Chromium. [1896428:1897552:0115/140239.807851:ERROR:gl_surface_egl.cc(303)] No suitable EGL configs found. [1896428:1897552:0115/140239.807872:ERROR:gl_context_egl.cc(159)] Failed to get config for surface 0 [1896428:1897552:0115/140239.807885:ERROR:gl_surface_egl.cc(303)] No suitable EGL configs found. [1896428:1897552:0115/140239.807889:ERROR:gl_surface_egl.cc(1018)] No suitable EGL configs found for initialization. [1896428:1897552:0115/140239.807892:ERROR:gpu_info_collector.cc(85)] gl::GLContext::CreateOffscreenGLSurface failed [1896428:1897552:0115/140239.807895:ERROR:gpu_info_collector.cc(597)] Could not create surface for info collection. [1896428:1897552:0115/140239.808002:ERROR:gl_surface_egl.cc(303)] No suitable EGL configs found. [1896428:1897552:0115/140239.808006:ERROR:gl_surface_egl.cc(1018)] No suitable EGL configs found for initialization. [1896428:1897552:0115/140239.808062:ERROR:gl_surface_egl.cc(303)] No suitable EGL configs found. [1896428:1897552:0115/140239.808065:ERROR:gl_surface_egl.cc(1018)] No suitable EGL configs found for initialization. [1896428:1897552:0115/140239.808068:ERROR:gpu_info_collector.cc(85)] gl::GLContext::CreateOffscreenGLSurface failed [1896428:1897552:0115/140239.808070:ERROR:gpu_info_collector.cc(597)] Could not create surface for info collection. Fatal Python error: Segmentation fault
Thread 0x00007f62af7fe640 (most recent call first): File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/ssl.py", line 1382 in do_handshake File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/ssl.py", line 1104 in _create File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/ssl.py", line 517 in wrap_socket File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/http/client.py", line 1475 in connect File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/http/client.py", line 996 in send File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/http/client.py", line 1058 in _send_output File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/http/client.py", line 1298 in endheaders File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/http/client.py", line 1349 in _send_request File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/http/client.py", line 1303 in request File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/urllib/request.py", line 1348 in do_open File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/urllib/request.py", line 1391 in https_open File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/urllib/request.py", line 496 in _call_chain File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/urllib/request.py", line 536 in _open File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/urllib/request.py", line 519 in open File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/urllib/request.py", line 216 in urlopen File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/site-packages/chimerax/core/toolshed/available.py", line 62 in load File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/site-packages/chimerax/core/toolshed/__init__.py", line 516 in reload_available File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/threading.py", line 982 in run File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/threading.py", line 1045 in _bootstrap_inner File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/threading.py", line 1002 in _bootstrap
Thread 0x00007f6378614740 (most recent call first): File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/site-packages/chimerax/ui/gui.py", line 414 in event_loop File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1064 in init File "/apps/src/CHIMERAX/src/ChimeraX/ChimeraX.app/lib/python3.11/site-packages/chimerax/core/__main__.py", line 1229 in <module> File "<frozen runpy>", line 88 in _run_code File "<frozen runpy>", line 198 in _run_module_as_main
Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, psutil._psutil_linux, psutil._psutil_posix, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.pdb_lib._load_libs, PIL._imaging, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler (total: 41) Segmentation fault (core dumped)
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