Hi Matthias, Sorry, not in general. Although you can see a histogram of attribute values in the Render by Attribute tool, the X-axis is the attribute value, not atom or residue number. <https://rbvi.ucsf.edu/chimerax/docs/user/tools/render.html> The Sequence Viewer can show various attributes as headers, but currently just things like sequence conservation and RMSD over associated structures. <https://rbvi.ucsf.edu/chimerax/docs/user/tools/sequenceviewer.html#headers> Best, Elaine ----- Elaine C. Meng, Ph.D. UCSF Chimera(X) team Resource for Biocomputing, Visualization, and Informatics Department of Pharmaceutical Chemistry University of California, San Francisco
On Jan 29, 2025, at 2:44 AM, Vorländer,Matthias Kopano via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Dear ChimeraX team, I wondered if it is possible to generate a line or scatter plot of an attribute value (B factor, Alphafold pLDDT scores, or AlphafoldMissense score…) over the residue number? For example something like this (taken fromhttps://journals.plos.org/plosone/article?id=10.1371/journal.pone.0089116) :
<image001.png>Specifically, for the AlphafoldMissense data, such a plot would be more informative then the default histogram that is displayed when fetching the scores when looking for functional hotspots in your POI. Many thanks, MAtthias