Hi Matthias,

  I made a video showing how to color two aligned proteins by their C-alpha distances from each other.

https://youtu.be/XaTpB-UIxnU

  Tom

calpha_rmsd.png

On Jul 4, 2023, at 7:02 AM, Vorländer,Matthias Kopano via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

Hi all, 
 
I would like to color proteins by the Ca-RMSD after aligning them, and found the Youtube tutorial on how to do this for proteins with identical sequence. However, I would like to compare structures from different species, as for example done in Figure 2 in this paper https://www.sciencedirect.com/science/article/pii/S0959440X16302408?via%3Dihub . Is this possible in ChimeraX?
 
Many thanks,
Matthias 
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