Hello

I have a commercial license of ChimeraX, I have a question you may be able to help with

I have used Structure prediction > Alphafold to predict structures and interactions between 2 proteins and this returned the best_model.pdb

But I would like to identify contacts within 8 angstroms, as shown in the Youtube video:

https://www.youtube.com/watch?v=TMcjEecFHaI&list=WL&index=26

I’m typing the command: alphafold contacts /A to /B distance 8

But receive the error:

‘Structure best_model.pdb #1 does not have PAE data opened’

Do I need to open something? If you can help that would be much appreciated

Many thanks

Tony

Anthony Newcombe PhD

Applied Biopharm Consulting Ltd

Cork, Ireland
www.appliedbiopharm.com

IE: +353 (0)87 3634486

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