Is your ChimeraX version up to date? That used to be an issue, but I haven’t seen it for quite a while now.
> On 23 Apr 2020, at 06:51, Daniel Asarnow <asarnow@msg.ucsf.edu> wrote:
>
> Hi all,
> When I save a CIF from ChimeraX, the missing segment pseudobonds are replaced by real (super unphysical) bonds. Can I do something about it, or is this a bug?
>
> Thanks and best,
> -da
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