Thank you! For this situation, however, if I do it in one command, I am not able to set different distance for each marker file. Is there a way of doing that?

On Wed, Jun 30, 2021 at 12:45 PM Elaine Meng <meng@cgl.ucsf.edu> wrote:

Hi Shiqing,
You would need to do it in one command, e.g.

color zone #2 near #4,5

<https://rbvi.ucsf.edu/chimerax/docs/user/commands/color.html#zone>

I hope this helps,
Elaine

> On Jun 30, 2021, at 12:09 PM, SHIQING LIAO via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
>
> Hi Elaine and Tom,
>
> I actually have a related question on marker files. I tried to color my density by “color zone #2 near #4 distance 70”, for example. However, it seems that I can only have one marker file colored (they are mutually exclusive). For example, if I want to color area around another model by “color zone #2 near #5”, the coloring done by the previous command near #4 will disappear.
>
> Best,
> Shiqing
>