Hi Mary,

The resfit command only works on amino acid sequences.  You can look at the density around specific residues using the Zone mouse mode in the "Right Mouse" toolbar.  You click on residues with right mouse button (or Command-click on Mac) and it shows just the residues and density nearby and labels the residues.  Here's an example

open 7tzt

open 7tzt from eds

ui mousemode right zone

        # Command-click on and atom of residue 89

Clicking on an atom and dragging up or down makes the zone shown around that residue larger or smaller.

Tom

On Sep 22, 2022, at 7:54 PM, Mary Liu via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

Dear Chimera X users, 

Is it possible to show the fit of each nucleotide (not amino acid residue) in density using the resfit command or something like that?

Thanks

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