Hi Enrico,

  open *.cif

  matchmaker #2-5 to #1

  save [NAME] format pdb models #1-5 relModel #1 

or 

    save alphafold_[ID].pdb format pdb models #1-5 relModel #1 

Please read the documentation before asking.

     https://www.cgl.ucsf.edu/chimerax/docs/user/commands/save.html#pdb

  Tom

On May 31, 2024, at 8:54 AM, Enrico Martinez via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:

Dear ChimeraX Users !

I am dealing with the analysis of multiple structural coordinates generated by AlphaFold for a target protein in *.cif extension. My goal is superimpose all the coordinates to the first model and save them in .pdb as separate files. So my script could be:

open ./*.cif

match #2-6 to #1 # probably there is a better solution

# and some command for save

What could be the solution to save all the coordinates in automatic way in separate pdb with the name patterns corresponded to the ID of these models ?

Many thanks in advance

Enrico

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