[chimerax-users] Re: [ISOLDE] Handling Lys-Asp iso-peptide bonds and D-amino acids

Hi Tristan and Eric, From hopelessness, I find myself newly heartened! I tried but failed to find mention of this isopeptide bond treatment in the original Chimera mailing list archives. Is the procedure mentioned here already part of the Add Charge menu function or a lower level function I can adapt? Also, is it something that can be easily jerry-rigged into ISOLDE's minimisation perhaps with a code change? Cheers, Yang