Dear All,
I’m new to Chimera X and to Colab Alphafold (AF), hope you can help please.
- I’m running Chimera X 1.4 on a Macbook Air.
- I want the predicted structure of a fairly large protein (1182 residues).
- When I first ran Colabfold_predict, it terminated after 90 min (RAM issue).
- I re-ran the same sequence *without * Energy Minimization.
- After 20 mins, it successfully returned the first model (see attached), but ran into RAM issues again.
Two questions:
- There is no ‘Prediction’ folder in my Downloads, so how can I download the *.pdb file of model #1 that it clearly has generated?
- If I cannot do this, will an upgrade to Colab Pro solve this issue for this size of protein?
Thanks for advice.
Kind regards,
Anthony