Hi,

Chimera allows one to map the CC between two maps onto a map and color the surface using the following commands:

vop localCorrelation #0 #1

scolor #0 volume #2 cmap 0.6,red:0.7,white:1,blue

I'm having difficulty executing the second command -mapping the values onto the first volume and assigning colors. Any help would be appreciated. 

Best wishes,
Reza