Hi Matthias, I don't believe there's a way to do this via the command interface at present, but it's pretty easy in Python: from chimerax.atomic import Residue m = session.isolde.selected_model #if using ISOLDE protein = m.residues[m.residues.polymer_types==Residue.PT_AMINO] incomplete = [r for r in protein if r.is_missing_heavy_template_atoms()] ... and then do with them what you will. One approach: from chimerax.core.commands import run from chimerax.atomic import concise_residue_spec incomplete = iter(incomplete) run(session, f'view {concise_residue_spec(session, [next(incomplete)])} pad 0.5') ... and then repeat that last line as needed until you hit `StopIteration`. On Thu, Jun 5, 2025 at 10:54 AM Vorländer,Matthias Kopano via ChimeraX-users <chimerax-users@cgl.ucsf.edu> wrote:
Hi everyone,
Is it possible to create a selector or python script to identify/match all truncated amino acids in a model? If not possible directly in ChimeraX, could ISOLDE offer a solution through matching to residue template “TRUNC_CB”?
Thanks in advance,
Matthias _______________________________________________ ChimeraX-users mailing list -- chimerax-users@cgl.ucsf.edu To unsubscribe send an email to chimerax-users-leave@cgl.ucsf.edu Archives: https://mail.cgl.ucsf.edu/mailman/archives/list/chimerax-users@cgl.ucsf.edu/
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